Gene | Slitrk3 |
Chromosome | 3 |
Deletion Start | 73,051,434 |
Deletion End | 73,048,401 |
Deletion Size | 3,034 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 3
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 73,049,728 | 73,049,746 | TTGGGACTGCACTTGCGAC |
TUP | 73,049,697 | 73,049,723 | TCCCCTTTAAGCAGTGGATCGAAACCA |
TUR | 73,049,675 | 73,049,695 | CCTACCACGCTGACTGAGCTG |
TDF | 73,049,090 | 73,049,110 | AGACCGTGGAGGTCCTGGTAC |
TDP | 73,049,064 | 73,049,088 | CAACCAACAGGAATGGCTGAGGTGC |
TDR | 73,049,042 | 73,049,062 | GCAAACTGCTCACTTCCCAAG |
PCR Primers
Primer | Sequence |
SU | GTTGCCTCATTTGGAGTATCG |
SD | GGCACAGTCAAAGTCTCGAG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | 277 bp | - | + | + |
TUF | TUR | 72 bp | + | + | - |
TDF | TDR | 69 bp | + | + | - |
NeoFwd | SD | 311 bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
10002G-G12 | VGB6 | C57BL/6NTac | |
10002H-F9 | VGB6 | C57BL/6NTac | |