Gene | Antxr1 |
Chromosome | 6 |
Deletion Start | 87,312,378 |
Deletion End | 87,282,676 |
Deletion Size | 29,703 |
Genome Build | 38 |
|
|
Primer Genomic Coordinates on Chromosome 6
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 87,312,332 | 87,312,352 | CGTGGAGCAGTTGGCTCATAG |
TUP | 87,312,300 | 87,312,321 | AAGAGACCGCGGCGCACACTCA |
TUR | 87,312,266 | 87,312,284 | GCAGGTGGGCTGGATTCAC |
TDF | 87,283,223 | 87,283,242 | TGAGCCCAACAAAGCAATGG |
TDP | 87,283,198 | 87,283,221 | CCTTTCACACCAGCCAAGGGCAGG |
TDR | 87,283,167 | 87,283,186 | CTGTTGCGCCAGGTGATGAG |
PCR Primers
Primer | Sequence |
SU | ATTGTCTGCTTCACTGTCAG |
SD | AGACTCTGAGAACAGAAGCTG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | 451 bp | - | + | + |
TUF | TUR | 87 bp | + | + | - |
TDF | TDR | 76 bp | + | + | - |
NeoFwd | SD | 350 bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
10072D-B6 | VGB6 | C57BL/6NTac | |
10072H-B7 | VGB6 | C57BL/6NTac | |
10072H-D2 | VGB6 | C57BL/6NTac | |
10072H-D10 | VGB6 | C57BL/6NTac | |
10072H-G1 | VGB6 | C57BL/6NTac | |
10072I-F4 | VGB6 | C57BL/6NTac | |
10072I-E2 | VGB6 | C57BL/6NTac | |