Gene | Prg3 |
Chromosome | 2 |
Deletion Start | 84,988,715 |
Deletion End | 84,993,766 |
Deletion Size | 5,052 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 2
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 84,989,383 | 84,989,404 | GAGGAGGCAATGGAGTCAGATC |
TUP | 84,989,425 | 84,989,450 | TCTGCTTGCCCCAAGGAAGAGGACAC |
TUR | 84,989,453 | 84,989,474 | CCAGGAGTTCCCTGAAAATGAG |
TDF | 84,993,568 | 84,993,590 | GCAGGTTATTGCCACAATGTTTG |
TDP | 84,993,597 | 84,993,625 | CCTTCCTTGGCTATCATCAGCTTCAGAGG |
TDR | 84,993,635 | 84,993,656 | CACCCAACCCTTGTCAGATACC |
PCR Primers
Primer | Sequence |
SU | GAGGCAGCAGTAGCCCTCCC |
SD | CTTTGTCACTGCTCCCCAAC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | 248 bp | - | + | + |
TUF | TUR | 92 bp | + | + | - |
TDF | TDR | 89 bp | + | + | - |
NeoFwd | SD | 323 bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
10177A-E7 | VGB6 | C57BL/6NTac | |
10177A-B11 | VGB6 | C57BL/6NTac | |
10177A-G10 | VGB6 | C57BL/6NTac | |