Gene | Krt27 |
Chromosome | 11 |
Deletion Start | 99,351,070 |
Deletion End | 99,345,560 |
Deletion Size | 5,530 |
Genome Build | 38 |
|
|
Primer Genomic Coordinates on Chromosome 11
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 99,350,876 | 99,350,895 | GGGCCTTCACAGCGAATGAG |
TUP | 99,350,853 | 99,350,874 | ACGGCCTCCTCTCCGGCAATGA |
TUR | 99,350,788 | 99,350,806 | CCAGTGCTTGCACGTTCTC |
TDF | 99,345,782 | 99,345,803 | CAGAGTTCACACCCTGGAAGAG |
TDP | 99,345,753 | 99,345,778 | TCCACCAAAGTCAACAAGACCGAGCA |
TDR | 99,345,718 | 99,345,738 | TCTGCTTTAGAGGCGGAGTTC |
PCR Primers
Primer | Sequence |
SU | CTTGATAACACTCCACCCTG |
SD | CCCTGTGTATTCAACCAGTAG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | 375 bp | - | + | + |
TUF | TUR | 108 bp | + | + | - |
TDF | TDR | 86 bp | + | + | - |
NeoFwd | SD | 282 bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
10380A-C1 | VGB6 | C57BL/6NTac | |
10380A-D5 | VGB6 | C57BL/6NTac | |
10380A-G2 | VGB6 | C57BL/6NTac | |