10439   Gkn1     Status: ES cell colonies screened / QC positives

GeneGkn1
Chromosome6
Deletion Start87,350,869
Deletion End87,346,230
Deletion Size4,640
Genome Build38
MGI IDMGI:1913533
NCBI Gene ID66283
BAC ID249L17
BAC LibrarybMQ
CassetteZEN-Ub1
Clones AvailableYes

Primer Genomic Coordinates on Chromosome 6

Please be aware that these oligonucleotides have been validated only by Taqman assay.

PrimerStartEndSequence
TUF87,350,18087,350,201GGCTGCGTTTCTCTTCTAGTTC
TUP87,350,15287,350,179TGTCTAGAGGAGTGATTCTCGACCTTCC
TUR87,350,10187,350,119GGCTGGGAGTCACGACAAC
TDF87,347,14987,347,167TCCGTCAACCCTACCAGAG
TDP87,347,12387,347,148TGGAGGACCTGAATACATTCGGACCA
TDR87,347,07087,347,090GGAATCTCCTCGGCCACATAG

PCR Primers

PrimerSequence
SUGTCAGAGGATGAGTCAGAGG
SDCAGCAGTGGCCTATCTGAG
LacInRTTGACTGTAGCGGCTGATGTTG
LacInfGGTAAACTGGCTCGGATTAGGG
NeoInRTACTTTCTCGGCAGGAGCAAGGTG
NeoInFTTCGGCTATGACTGGGCACAACAG
LacInZRevGTCTGTCCTAGCTTCCTCACTG
NeoFwdTCATTCTCAGTATTGTTTTGCC

Predicted PCR Products

Forward PrimerReverse PrimerLengthWTHETKO
SULacZRev342 bp-++
TUFTUR101 bp++-
TDFTDR98 bp++-
NeoFwdSD326 bp-++
LacInfLacInR210 bp-++
NeoInfNeoInR282 bp-++

Available Clones

ES Cell ordering information can be found at the KOMP Repository.
Clone NameParental ES CellMouse StrainCassette Copy Number
10439A-C4VGB6C57BL/6NTac
10439A-H8VGB6C57BL/6NTac
10439B-D8VGB6C57BL/6NTac
10439B-F11VGB6C57BL/6NTac