Gene | Saa4 |
Chromosome | 7 |
Deletion Start | 46,731,693 |
Deletion End | 46,729,487 |
Deletion Size | 2,207 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 7
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 46,731,482 | 46,731,499 | GGCAGGAGTCTGGCTTTC |
TUP | 46,731,457 | 46,731,479 | TGGCTTCCACCCTACACTGGTCA |
TUR | 46,731,406 | 46,731,425 | GCAGGCTGGACATTGTGAAC |
TDF | 46,730,459 | 46,730,480 | ACAGCCCAGGACACTGTAACTG |
TDP | 46,730,432 | 46,730,454 | TCAACCCAACCCAAGCCAACCCA |
TDR | 46,730,398 | 46,730,419 | GTTCCCTGGTGACCATAAGGAG |
PCR Primers
Primer | Sequence |
SU | ATGATCAACTGACTCGTGGC |
SD | AACAGAGACCGGTTGTGACC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 94 bp | + | + | - |
TDF | TDR | 83 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
10441A-B6 | VGB6 | C57BL/6NTac | |
10441A-E8 | VGB6 | C57BL/6NTac | |
10441A-G7 | VGB6 | C57BL/6NTac | |
10441A-G9 | VGB6 | C57BL/6NTac | |
10441A-G12 | VGB6 | C57BL/6NTac | |