Gene | Gsdma2 |
Chromosome | 11 |
Deletion Start | 98,666,043 |
Deletion End | 98,657,988 |
Deletion Size | 8,056 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 11
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 98,649,458 | 98,649,479 | TTCCTTACCACAGATCCAACAC |
TUP | 98,649,506 | 98,649,534 | ATGCTGGATGTCAGAGTAGAGGGAGATGT |
TUR | 98,649,549 | 98,649,571 | CACAGTCCCCTTTACCTTCATCA |
TDF | 98,657,782 | 98,657,800 | AGCCTTCCCGGCCTTACTG |
TDP | 98,657,801 | 98,657,828 | TGCTCTGTCTGAAACACTCCAAGATGGT |
TDR | 98,657,850 | 98,657,870 | ACTGCCTCTGCCTCCTGACTG |
PCR Primers
Primer | Sequence |
SU | AGGGGAAGGCTGGCATCTTG |
SD | GGAGTTGCTAAAGAGCTGTG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | 17350 bp | - | + | + |
TUF | TUR | 114 bp | + | + | - |
TDF | TDR | 89 bp | + | + | - |
NeoFwd | SD | 386 bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
10517A-B3 | VGB6 | C57BL/6NTac | |
10517A-C7 | VGB6 | C57BL/6NTac | |
10517A-G2 | VGB6 | C57BL/6NTac | |
10517B-D9 | VGB6 | C57BL/6NTac | |
10517B-E11 | VGB6 | C57BL/6NTac | |