Gene | Shroom1 |
Chromosome | 11 |
Deletion Start | 53,463,235 |
Deletion End | 53,467,210 |
Deletion Size | 3,976 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 11
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 53,463,965 | 53,463,983 | GCCCACTGGTGAGGACTTG |
TUP | 53,463,989 | 53,464,016 | AGATTATTCCACGCAGGAGTTGCAGCGT |
TUR | 53,464,027 | 53,464,047 | CCAGCAGCCCTTTGGACTTTG |
TDF | 53,466,999 | 53,467,018 | GAGCGACCTCAGCCATCATC |
TDP | 53,467,020 | 53,467,043 | CCTTTCTCCCAGACTGACCTGGGC |
TDR | 53,467,102 | 53,467,122 | CAATGTTCCCACCTCCGCTAC |
PCR Primers
Primer | Sequence |
SU | ACTTGCGCGCATCCTATTGC |
SD | TGTCTTTTGTGGAGGCAGAC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | 383 bp | - | + | + |
TUF | TUR | 83 bp | + | + | - |
TDF | TDR | 124 bp | + | + | - |
NeoFwd | SD | 374 bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
10607A-G6 | VGB6 | C57BL/6NTac | |
10607A-G12 | VGB6 | C57BL/6NTac | |
10607B-H9 | VGB6 | C57BL/6NTac | |
10607B-D9 | VGB6 | C57BL/6NTac | |
10607B-D11 | VGB6 | C57BL/6NTac | |
10607B-G1 | VGB6 | C57BL/6NTac | |