10607   Shroom1     Status: ES cell colonies screened / QC positives

GeneShroom1
Chromosome11
Deletion Start53,463,235
Deletion End53,467,210
Deletion Size3,976
Genome Build38
MGI IDMGI:1919024
NCBI Gene ID71774
BAC ID401H18
BAC LibrarybMQ
CassetteZEN-Ub1
Clones AvailableYes

Primer Genomic Coordinates on Chromosome 11

Please be aware that these oligonucleotides have been validated only by Taqman assay.

PrimerStartEndSequence
TUF53,463,96553,463,983GCCCACTGGTGAGGACTTG
TUP53,463,98953,464,016AGATTATTCCACGCAGGAGTTGCAGCGT
TUR53,464,02753,464,047CCAGCAGCCCTTTGGACTTTG
TDF53,466,99953,467,018GAGCGACCTCAGCCATCATC
TDP53,467,02053,467,043CCTTTCTCCCAGACTGACCTGGGC
TDR53,467,10253,467,122CAATGTTCCCACCTCCGCTAC

PCR Primers

PrimerSequence
SUACTTGCGCGCATCCTATTGC
SDTGTCTTTTGTGGAGGCAGAC
LacInRTTGACTGTAGCGGCTGATGTTG
LacInfGGTAAACTGGCTCGGATTAGGG
NeoInRTACTTTCTCGGCAGGAGCAAGGTG
NeoInFTTCGGCTATGACTGGGCACAACAG
LacInZRevGTCTGTCCTAGCTTCCTCACTG
NeoFwdTCATTCTCAGTATTGTTTTGCC

Predicted PCR Products

Forward PrimerReverse PrimerLengthWTHETKO
SULacZRev383 bp-++
TUFTUR83 bp++-
TDFTDR124 bp++-
NeoFwdSD374 bp-++
LacInfLacInR210 bp-++
NeoInfNeoInR282 bp-++

Available Clones

ES Cell ordering information can be found at the KOMP Repository.
Clone NameParental ES CellMouse StrainCassette Copy Number
10607A-G6VGB6C57BL/6NTac
10607A-G12VGB6C57BL/6NTac
10607B-H9VGB6C57BL/6NTac
10607B-D9VGB6C57BL/6NTac
10607B-D11VGB6C57BL/6NTac
10607B-G1VGB6C57BL/6NTac