Gene | Islr |
Chromosome | 9 |
Deletion Start | 58,158,219 |
Deletion End | 58,156,918 |
Deletion Size | 1,302 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 9
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 58,157,677 | 58,157,699 | TGCAGATCAATGACAACCCTTTC |
TUP | 58,157,653 | 58,157,675 | ACTGCACCTGTGGCATCGTGTGG |
TUR | 58,157,610 | 58,157,632 | GTTCTGGAATAGACACCGCTGAG |
TDF | 58,157,260 | 58,157,279 | CTGACTTTGGCAAGCTGGAG |
TDP | 58,157,236 | 58,157,258 | AGGGCACCTATAGCTGCCTGGCC |
TDR | 58,157,215 | 58,157,233 | GGCACTGCCTAGCTCATTG |
PCR Primers
Primer | Sequence |
SU | CACACGACCTTGGCAAGTC |
SD | TAGCTGCTAGTTCTGAGCAG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | 333 bp | - | + | + |
TUF | TUR | 90 bp | + | + | - |
TDF | TDR | 65 bp | + | + | - |
NeoFwd | SD | 296 bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
10617A-B12 | VGB6 | C57BL/6NTac | |