Gene | Tubb5 |
Chromosome | 17 |
Deletion Start | 35,838,050 |
Deletion End | 35,834,982 |
Deletion Size | 3,069 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 17
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 35,837,736 | 35,837,757 | GAGGCTGAGGGACTGTGAAGAG |
TUP | 35,837,691 | 35,837,718 | TTTCTAACGGTTCGAGGACTGGAGGGAT |
TUR | 35,837,667 | 35,837,687 | GGCTTTGTCTCGGATCGTTTC |
TDF | 35,835,207 | 35,835,228 | GGCAGTCACCTTCATTGGAAAC |
TDP | 35,835,182 | 35,835,206 | AGCACAGCCATCCAGGAGCTCTTCA |
TDR | 35,835,156 | 35,835,177 | AGCCGTAAACTGCTCAGAGATG |
PCR Primers
Primer | Sequence |
SU | CTGGTTGGGTAGGCTTTGTC |
SD | GGGTAACAACCAGAATGTCAG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | 431 bp | - | + | + |
TUF | TUR | 91 bp | + | + | - |
TDF | TDR | 73 bp | + | + | - |
NeoFwd | SD | 337 bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
10769E-G10 | VGB6 | C57BL/6NTac | |
10769D-E5 | VGB6 | C57BL/6NTac | |
10769E-C1 | VGB6 | C57BL/6NTac | |