Gene | Ap1s1 |
Chromosome | 5 |
Deletion Start | 137,043,239 |
Deletion End | 137,035,689 |
Deletion Size | 7,551 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 5
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 137,043,150 | 137,043,173 | GACAAGGAGAGGAAGAAGATGGTC |
TUP | 137,043,124 | 137,043,147 | AGAGCTCATGCAAGTCGTCCTGGC |
TUR | 137,043,102 | 137,043,121 | GCTGCACATTTTGGGCTTTC |
TDF | 137,036,515 | 137,036,532 | GAGGCCGTCTGTCAGTTC |
TDP | 137,036,489 | 137,036,513 | CCCTGCTGTCTGGCATCCCTACCTT |
TDR | 137,036,425 | 137,036,445 | GACTCATCTCCCTGCACCAAG |
PCR Primers
Primer | Sequence |
SU | TTGCCTGAGGCTGTACTCG |
SD | ATGGAAGCCACTGAGCACC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | 368 bp | - | + | + |
TUF | TUR | 72 bp | + | + | - |
TDF | TDR | 108 bp | + | + | - |
NeoFwd | SD | 335 bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
10776A-A12 | VGB6 | C57BL/6NTac | |
10776B-C11 | VGB6 | C57BL/6NTac | |