Gene | Arl9 |
Chromosome | 5 |
Deletion Start | 77,004,058 |
Deletion End | 77,009,476 |
Deletion Size | 5,419 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 5
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 77,004,202 | 77,004,222 | GGCCTTGTCCATACCATAGTG |
TUP | 77,004,224 | 77,004,251 | TGACTCAGAAAGGCACTGCAACACTTCG |
TUR | 77,004,262 | 77,004,282 | TCATAACCCTGCCCTAACCTC |
TDF | 77,009,067 | 77,009,084 | AGCAGTGGAGGAGGGAAC |
TDP | 77,009,085 | 77,009,110 | TGCAAAGACTTAGACGCTCCAGTACC |
TDR | 77,009,113 | 77,009,132 | GAGTGCTACACAGCCCAAAG |
PCR Primers
Primer | Sequence |
SU | GCTTGACTCTTAGAGCTACC |
SD | CCTGTCTCAAATAGAGGTGG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | 408 bp | - | + | + |
TUF | TUR | 81 bp | + | + | - |
TDF | TDR | 66 bp | + | + | - |
NeoFwd | SD | 414 bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
10822A-C4 | VGB6 | C57BL/6NTac | |
10822A-D11 | VGB6 | C57BL/6NTac | |
10822A-F9 | VGB6 | C57BL/6NTac | |