Gene | Sprn |
Chromosome | 7 |
Deletion Start | 140,153,654 |
Deletion End | 140,153,212 |
Deletion Size | 443 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 7
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | | | GCCGCCTTCCTCTGTGA |
TUP | 140,153,552 | 140,153,571 | AGGCGCTCGAGGCAGTGCCC |
TUR | | | CGCAGAGAGGAGCCGTA |
TDF | 140,153,354 | 140,153,374 | GCCTGGAGGACGATGAGAATG |
TDP | 140,153,327 | 140,153,350 | CAATGGGAGGCAACGGAACCGACC |
TDR | 140,153,302 | 140,153,321 | CAGGCCCAGTAGCTGTAGAC |
PCR Primers
Primer | Sequence |
SU | CAGAGACTCGTGTGCAGAGC |
SD | GCATTGTTCATGTCCTCGTG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TDF | TDR | 73 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
11009A-A6 | VGB6 | C57BL/6NTac | |
11009A-B1 | VGB6 | C57BL/6NTac | |
11009A-C4 | VGB6 | C57BL/6NTac | |
11009A-C12 | VGB6 | C57BL/6NTac | |
11009A-F5 | VGB6 | C57BL/6NTac | |
11009A-G11 | VGB6 | C57BL/6NTac | |