11018   Ssxa1     Status: ES cell colonies screened / QC positives

GeneSsxa1
ChromosomeX
Deletion Start21,118,417
Deletion End21,121,439
Deletion Size3,023
Genome Build38
MGI IDMGI:2446782
NCBI Gene ID385338
BAC ID420B22
BAC LibrarybMQ
CassetteZEN-Ub1
Clones AvailableYes

Primer Genomic Coordinates on Chromosome X

Please be aware that these oligonucleotides have been validated only by Taqman assay.

PrimerStartEndSequence
TUF21,118,79921,118,818TCCACCCATCAGGAGCTTTC
TUP21,118,81921,118,845TCTAATTCCCACAAGTTGCGTGGAGGT
TUR21,118,85721,118,877CCTTCAGCCTAGAGCATGTCC
TDF21,121,00221,121,026TGAGGTCCAAGCTCTATACTTTCTG
TDP21,121,03821,121,066CTCTTAAATCCTCTCAGCACCCAGCTCCC
TDR21,121,08921,121,109TCACTGGTCTTCTGAGTCCTG

PCR Primers

PrimerSequence
SUATCTCCCTCCACAGTACTCC
SDCTGCAAAACATGCATGTTCC
LacInRTTGACTGTAGCGGCTGATGTTG
LacInfGGTAAACTGGCTCGGATTAGGG
NeoInRTACTTTCTCGGCAGGAGCAAGGTG
NeoInFTTCGGCTATGACTGGGCACAACAG
LacInZRevGTCTGTCCTAGCTTCCTCACTG
NeoFwdTCATTCTCAGTATTGTTTTGCC

Predicted PCR Products

Forward PrimerReverse PrimerLengthWTHETKO
SULacZRev515 bp-++
TUFTUR79 bp++-
TDFTDR108 bp++-
NeoFwdSD474 bp-++
LacInfLacInR210 bp-++
NeoInfNeoInR282 bp-++

Available Clones

ES Cell ordering information can be found at the KOMP Repository.
Clone NameParental ES CellMouse StrainCassette Copy Number
11018B-F11VGB6C57BL/6NTac