Gene | Ssxa1 |
Chromosome | X |
Deletion Start | 21,118,417 |
Deletion End | 21,121,439 |
Deletion Size | 3,023 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome X
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 21,118,799 | 21,118,818 | TCCACCCATCAGGAGCTTTC |
TUP | 21,118,819 | 21,118,845 | TCTAATTCCCACAAGTTGCGTGGAGGT |
TUR | 21,118,857 | 21,118,877 | CCTTCAGCCTAGAGCATGTCC |
TDF | 21,121,002 | 21,121,026 | TGAGGTCCAAGCTCTATACTTTCTG |
TDP | 21,121,038 | 21,121,066 | CTCTTAAATCCTCTCAGCACCCAGCTCCC |
TDR | 21,121,089 | 21,121,109 | TCACTGGTCTTCTGAGTCCTG |
PCR Primers
Primer | Sequence |
SU | ATCTCCCTCCACAGTACTCC |
SD | CTGCAAAACATGCATGTTCC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | 515 bp | - | + | + |
TUF | TUR | 79 bp | + | + | - |
TDF | TDR | 108 bp | + | + | - |
NeoFwd | SD | 474 bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
11018B-F11 | VGB6 | C57BL/6NTac | |