Gene | Gprin3 |
Chromosome | 6 |
Deletion Start | 59,355,317 |
Deletion End | 59,353,009 |
Deletion Size | 2,309 |
Genome Build | 38 |
|
|
Primer Genomic Coordinates on Chromosome 6
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 59,354,476 | 59,354,495 | CTGCTACCAGCACAGTATCC |
TUP | 59,354,436 | 59,354,465 | TTTAAAGAAGCCAGTACAATGACCTGCCAA |
TUR | 59,354,402 | 59,354,422 | CCCTGCCAGAGACCTCCTTAG |
TDF | 59,353,581 | 59,353,601 | GGGAGGAAGAGCCAACAGAAC |
TDP | 59,353,556 | 59,353,580 | ACCTTGGAAGAACTCAGGCAGCCCA |
TDR | 59,353,509 | 59,353,526 | CGAGTCACCTGTGCCATC |
PCR Primers
Primer | Sequence |
SU | GAGTCTCACTGCCTTGTCCAG |
SD | CCATCCTGTGATAGACTGAGG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 94 bp | + | + | - |
TDF | TDR | 93 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
11150A-B8 | VGB6 | C57BL/6NTac | |
11150A-H11 | VGB6 | C57BL/6NTac | |
11150A-H5 | VGB6 | C57BL/6NTac | |
11150A-C8 | VGB6 | C57BL/6NTac | |
11150A-C5 | VGB6 | C57BL/6NTac | |