Gene | Svs1 |
Chromosome | 6 |
Deletion Start | 48,987,063 |
Deletion End | 48,991,614 |
Deletion Size | 4,552 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 6
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 48,987,241 | 48,987,258 | TGCAGCCATCCACGTTAC |
TUP | 48,987,265 | 48,987,288 | TGGCCAAGAACTCCGTGTTCCTCA |
TUR | 48,987,311 | 48,987,330 | GGAAAGCCAGCACCTCATAC |
TDF | 48,991,088 | 48,991,111 | ACCAGACACCAGACTCCCTAGAAG |
TDP | 48,991,116 | 48,991,142 | ACTCAATGCCTGCACAGTTCAGCTACA |
TDR | 48,991,152 | 48,991,171 | AGCTGGGCCAGACACAAGAC |
PCR Primers
Primer | Sequence |
SU | TCCGCTGCTGTGACTCATG |
SD | TGAATGTAATACATACTAGTCC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | 424 bp | - | + | + |
TUF | TUR | 90 bp | + | + | - |
TDF | TDR | 84 bp | + | + | - |
NeoFwd | SD | 317 bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
11307A-C7 | VGB6 | C57BL/6NTac | |
11307A-A12 | VGB6 | C57BL/6NTac | |
11307A-G1 | VGB6 | C57BL/6NTac | |