Gene | Gcc1 |
Chromosome | 6 |
Deletion Start | 28,421,313 |
Deletion End | 28,417,957 |
Deletion Size | 3,357 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 6
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 28,420,642 | 28,420,663 | GCAAGAGCAGATAGCAGAAACC |
TUP | 28,420,616 | 28,420,639 | AGCCCGCCTCATTACACAGCAGCA |
TUR | 28,420,567 | 28,420,585 | AAGCTCGCGCAGCATCAAG |
TDF | 28,418,411 | 28,418,432 | CCGACACAGCCTCCTCAGATAG |
TDP | 28,418,389 | 28,418,410 | CTTGACCCAGGCCCTGCAGCTT |
TDR | 28,418,348 | 28,418,371 | TGCTCAGCATAAAGAAAGAAGGTG |
PCR Primers
Primer | Sequence |
SU | TGCTAGGTCAGCGTCACTC |
SD | CACTACGAGATGCTGTCTCA |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | 349 bp | - | + | + |
TUF | TUR | 97 bp | + | + | - |
TDF | TDR | 85 bp | + | + | - |
NeoFwd | SD | 293 bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
11391A-B11 | VGB6 | C57BL/6NTac | |