Gene | Trem3 |
Chromosome | 17 |
Deletion Start | 48,247,852 |
Deletion End | 48,258,547 |
Deletion Size | 10,895 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 17
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 48,248,559 | 48,248,578 | TGGGCCACCAGACATACAAC |
TUP | 48,248,588 | 48,248,616 | TAGAGAACTGGGAATAGTGGGACATGCCT |
TUR | 48,248,617 | 48,248,636 | CTCCCGACTGCTAGGATGAC |
TDF | 48,257,759 | 48,257,777 | GCAAGGCAGGTAGCAGGTC |
TDP | 48,257,778 | 48,257,801 | CAACCACAGAGCCCTGAAGGCAGG |
TDR | 48,257,832 | 48,257,855 | GCAAGTGTGAGCACTCCAAGAATG |
PCR Primers
Primer | Sequence |
SU | GATTGTGGCATCAAAGGAGG |
SD | GAGATAGGTTACATCATATAGG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 78 bp | + | + | - |
TDF | TDR | 97 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
11412A-E5 | VGB6 | C57BL/6NTac | |
11412B-B12 | VGB6 | C57BL/6NTac | |
11412B-H2 | VGB6 | C57BL/6NTac | |