Gene | Mrpl40 |
Chromosome | 16 |
Deletion Start | 18,876,520 |
Deletion End | 18,872,281 |
Deletion Size | 4,240 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 16
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 18,876,384 | 18,876,406 | CGCTAGTGCTCGCAGATTATTTC |
TUP | 18,876,362 | 18,876,383 | TGGGCATGAGCCTACCGCATCT |
TUR | 18,876,283 | 18,876,302 | GCACGACTTAGGCTTCACAC |
TDF | 18,872,710 | 18,872,731 | CAAGGGTCCCTCTGCAATAGTG |
TDP | 18,872,680 | 18,872,705 | TACTCTTTGGCCTCCCATGTTTGCTC |
TDR | 18,872,649 | 18,872,667 | CCTGAGGTCGCTGTCTGTG |
PCR Primers
Primer | Sequence |
SU | TGTAAACACATAGGCCAGGC |
SD | CCAGCATCTGAAAACCTCAG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | 387 bp | - | + | + |
TUF | TUR | 124 bp | + | + | - |
TDF | TDR | 83 bp | + | + | - |
NeoFwd | SD | 427 bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
11524B-C6 | VGB6 | C57BL/6NTac | |
11524B-C8 | VGB6 | C57BL/6NTac | |
11524B-D4 | VGB6 | C57BL/6NTac | |