Gene | Sycp3 |
Chromosome | 10 |
Deletion Start | 88,459,669 |
Deletion End | 88,472,959 |
Deletion Size | 13,291 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 10
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 88,460,090 | 88,460,109 | AGGGCCGAGGGAACTAGGAG |
TUP | 88,460,110 | 88,460,134 | TCAAGGGCTAAAGCAGTCGGGAAGC |
TUR | 88,460,188 | 88,460,207 | CCTCAGCCTGACCCTTCTTC |
TDF | 88,472,039 | 88,472,062 | ACTAGGGCAGAGTTCAATCTATGG |
TDP | 88,472,064 | 88,472,083 | ACCCATATGCTAGAAGAAGA |
TDR | 88,472,084 | 88,472,105 | ACAACTCGTGGGTACTAGGTTC |
PCR Primers
Primer | Sequence |
SU | GAGGATCCATGAGCAAAGATG |
SD | CTATACTTGGAACCTTGTACC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | 451 bp | - | + | + |
TUF | TUR | 118 bp | + | + | - |
TDF | TDR | 67 bp | + | + | - |
NeoFwd | SD | 434 bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
11560A-C8 | VGB6 | C57BL/6NTac | |
11560A-H1 | VGB6 | C57BL/6NTac | |
11560A-D10 | VGB6 | C57BL/6NTac | |
11560A-D8 | VGB6 | C57BL/6NTac | |
11560A-E5 | VGB6 | C57BL/6NTac | |