Gene | Abi3 |
Chromosome | 11 |
Deletion Start | 95,842,143 |
Deletion End | 95,832,627 |
Deletion Size | 9,517 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 11
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 95,841,947 | 95,841,967 | TCCCTCTGGTAGGGTCATCTG |
TUP | 95,841,920 | 95,841,945 | CAGGTATCTGTTCCTGCCTTGGCTGA |
TUR | 95,841,894 | 95,841,914 | GGATTGCGTTGAAGCCTGAAG |
TDF | 95,832,762 | 95,832,781 | TGGTGTGAGGGTGTCAGTTC |
TDP | 95,832,736 | 95,832,759 | AGGGCACTGGATTCTTCCCAGGGA |
TDR | 95,832,682 | 95,832,701 | CAGGGTTGGTGCAGGGATAG |
PCR Primers
Primer | Sequence |
SU | TTGGTGAGATTGAGAGACCG |
SD | CTCCTTGCCTTCTAGGTTTG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | 381 bp | - | + | + |
TUF | TUR | 74 bp | + | + | - |
TDF | TDR | 100 bp | + | + | - |
NeoFwd | SD | 260 bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
11588A-A1 | VGB6 | C57BL/6NTac | |
11588A-A6 | VGB6 | C57BL/6NTac | |
11588A-C2 | VGB6 | C57BL/6NTac | |
11588A-G10 | VGB6 | C57BL/6NTac | |