Gene | Zfp36 |
Chromosome | 7 |
Deletion Start | 28,379,194 |
Deletion End | 28,377,540 |
Deletion Size | 1,655 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 7
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 28,378,465 | 28,378,485 | GTCGATGAGCCATGACCTGTC |
TUP | 28,378,440 | 28,378,462 | CCGACCACGGAGGAACCGAATCC |
TUR | 28,378,402 | 28,378,425 | GGGATGGAGTCCGAGTTTATGTTC |
TDF | 28,378,250 | 28,378,271 | CCTACTTCGCCTACTGCAACTC |
TDP | 28,378,223 | 28,378,249 | CCACCACCTCCTCTCGATACAAGACCG |
TDR | 28,378,189 | 28,378,206 | CAACGCCCGCTTTCTGAG |
PCR Primers
Primer | Sequence |
SU | CACCTCCAGTTGGTCGTAC |
SD | GAAGACCAACTGTCAACTGTC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | 396 bp | - | + | + |
TUF | TUR | 84 bp | + | + | - |
TDF | TDR | 83 bp | + | + | - |
NeoFwd | SD | 331 bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
11603A-B8 | VGB6 | C57BL/6NTac | |
11603B-G9 | VGB6 | C57BL/6NTac | |