Gene | Abcb9 |
Chromosome | 5 |
Deletion Start | 124,090,173 |
Deletion End | 124,062,603 |
Deletion Size | 27,571 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 5
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 124,089,581 | 124,089,601 | CGTAGCAGCTCTGGGTAAGTG |
TUP | 124,089,554 | 124,089,577 | CCTTGGGTCTGACCACACTGAGCC |
TUR | 124,089,522 | 124,089,541 | AGGCACCCTGCAAGTACATC |
TDF | 124,063,085 | 124,063,105 | TGGGCTGTCTGGAATAGAAAC |
TDP | 124,063,061 | 124,063,083 | CAGGACTTGAGCTGCCTTGGTCC |
TDR | 124,063,030 | 124,063,052 | GCTGACATTCAGTTCTTGGGTTG |
PCR Primers
Primer | Sequence |
SU | GAGTGTCTGGCTGGCTTCTG |
SD | CTCTCCCAGACATCCTCCAG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | 600 bp | - | + | + |
TUF | TUR | 80 bp | + | + | - |
TDF | TDR | 76 bp | + | + | - |
NeoFwd | SD | 387 bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
11648B-F7 | VGB6 | C57BL/6NTac | |
11648C-A3 | VGB6 | C57BL/6NTac | |
11648C-H4 | VGB6 | C57BL/6NTac | |