Gene | Ctss |
Chromosome | 3 |
Deletion Start | 95,526,903 |
Deletion End | 95,556,199 |
Deletion Size | 29,297 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 3
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 95,527,738 | 95,527,759 | GGTTGAGCTGCTTGGTTGTTTG |
TUP | 95,527,765 | 95,527,788 | CTTTGGTGTTCACGCTCAGGCCAA |
TUR | 95,527,839 | 95,527,859 | TGTCCAGGCAACACAGAGAAG |
TDF | 95,555,531 | 95,555,550 | GCTGGGCCACACCTGTAATC |
TDP | 95,555,552 | 95,555,579 | CAGGCTTGGAAAGTCAAAGCTGGAGAAC |
TDR | 95,555,584 | 95,555,604 | ACGCAGTCTGGCTGCAAGTTC |
PCR Primers
Primer | Sequence |
SU | TTGTCCTGTTCTCTGCTGAG |
SD | AATGTTATCTAAGGACGACTTG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | 403 bp | - | + | + |
TUF | TUR | 122 bp | + | + | - |
TDF | TDR | 74 bp | + | + | - |
NeoFwd | SD | 352 bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
11653A-B12 | VGB6 | C57BL/6NTac | |
11653B-A5 | VGB6 | C57BL/6NTac | |
11653C-C9 | VGB6 | C57BL/6NTac | |
11653B-A2 | VGB6 | C57BL/6NTac | |