Gene | Calu |
Chromosome | 6 |
Deletion Start | 29,356,460 |
Deletion End | 29,374,504 |
Deletion Size | 18,045 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 6
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 29,356,960 | 29,356,979 | GCGGCACATACTGCTCTTTC |
TUP | 29,356,982 | 29,357,009 | AGGACCCAGATTCAATATCTAGCGCTCA |
TUR | 29,357,011 | 29,357,033 | CAGATGGATGGGTAACTCTTGAC |
TDF | 29,374,367 | 29,374,387 | TGGCCTCAATTCACTGTTCAC |
TDP | 29,374,388 | 29,374,413 | TCTGGTTTCAGGATGGCAAGCTCACC |
TDR | 29,374,438 | 29,374,459 | CCTGGCTGCCCACAAATAAATC |
PCR Primers
Primer | Sequence |
SU | TCGTAATTAGCCCAGAGTCG |
SD | GTAAACCTACAGACACAAGTG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | 348 bp | - | + | + |
TUF | TUR | 74 bp | + | + | - |
TDF | TDR | 93 bp | + | + | - |
NeoFwd | SD | 309 bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
11661A-C4 | VGB6 | C57BL/6NTac | |
11661B-G1 | VGB6 | C57BL/6NTac | |
11661B-F3 | VGB6 | C57BL/6NTac | |
11661B-F10 | VGB6 | C57BL/6NTac | |
11661C-B6 | VGB6 | C57BL/6NTac | |