11668   Gnpda2     Status: ES cell colonies screened / QC positives

GeneGnpda2
Chromosome5
Deletion Start69,589,781
Deletion End69,575,682
Deletion Size14,100
Genome Build38
MGI IDMGI:1915230
NCBI Gene ID67980
BAC ID420K22
BAC LibrarybMQ
CassetteZEN-Ub1
Clones AvailableYes

Primer Genomic Coordinates on Chromosome 5

Please be aware that these oligonucleotides have been validated only by Taqman assay.

PrimerStartEndSequence
TUF69,589,37469,589,394TTCTAGGACACCGCCTTCATC
TUP69,589,35569,589,373AGTCCTGATTTCTTACAGC
TUR69,589,31569,589,337GCAATGCGAAACTGAGTCATCAC
TDF69,576,15869,576,176CTCTCCAGGGCTCTGCAAG
TDP69,576,13469,576,156CAAGCACTCAGGCTGCACTGGGA
TDR69,576,10169,576,125GAGTAGACGTGGACTGAGTAGATAC

PCR Primers

PrimerSequence
SUACAGACAAGTCATGTGAGTCC
SDACTGCAGAAAGATGACTAAGG
LacInRTTGACTGTAGCGGCTGATGTTG
LacInfGGTAAACTGGCTCGGATTAGGG
NeoInRTACTTTCTCGGCAGGAGCAAGGTG
NeoInFTTCGGCTATGACTGGGCACAACAG
LacInZRevGTCTGTCCTAGCTTCCTCACTG
NeoFwdTCATTCTCAGTATTGTTTTGCC

Predicted PCR Products

Forward PrimerReverse PrimerLengthWTHETKO
SULacZRev452 bp-++
TUFTUR80 bp++-
TDFTDR76 bp++-
NeoFwdSD364 bp-++
LacInfLacInR210 bp-++
NeoInfNeoInR282 bp-++

Available Clones

ES Cell ordering information can be found at the KOMP Repository.
Clone NameParental ES CellMouse StrainCassette Copy Number
11668A-G2VGB6C57BL/6NTac
11668D-D1VGB6C57BL/6NTac
11668D-G4VGB6C57BL/6NTac