Gene | Iscu |
Chromosome | 5 |
Deletion Start | 113,772,814 |
Deletion End | 113,777,925 |
Deletion Size | 5,112 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 5
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 113,773,272 | 113,773,293 | TGACAGGAGTCTTCTGAAGTCC |
TUP | 113,773,306 | 113,773,329 | CGCTCGGTCCAACCAAGGGAAACC |
TUR | 113,773,375 | 113,773,393 | GGCTAGGTGCTTGGCTGAG |
TDF | 113,777,806 | 113,777,829 | AGCTGTCTACCTTCCCATGCCTTC |
TDP | 113,777,833 | 113,777,854 | TGCTGGCAGAAGACGCCATCAA |
TDR | 113,777,883 | 113,777,905 | GGCTCCTCCTTCTTGGACTCTTG |
PCR Primers
Primer | Sequence |
SU | TCGAATCATAAACACGCCTG |
SD | CTGGCAATCTACCTCAGGTC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | 353 bp | - | + | + |
TUF | TUR | 122 bp | + | + | - |
TDF | TDR | 100 bp | + | + | - |
NeoFwd | SD | 338 bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
11691A-A12 | VGB6 | C57BL/6NTac | |
11691A-B10 | VGB6 | C57BL/6NTac | |
11691A-B11 | VGB6 | C57BL/6NTac | |
11691A-H8 | VGB6 | C57BL/6NTac | |