Gene | Ifnar2 |
Chromosome | 16 |
Deletion Start | 91,383,902 |
Deletion End | 91,404,482 |
Deletion Size | 20,601 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 16
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 91,384,729 | 91,384,747 | CCCTGCCGTTTGTGTCAAG |
TUP | 91,384,748 | 91,384,771 | TCCCAGCGGCCTCACTTTACATCC |
TUR | 91,384,783 | 91,384,801 | CGTGTGCCATCTGAAGGTG |
TDF | 91,403,889 | 91,403,907 | ACTGACGGGCAAGCCTCTG |
TDP | 91,403,911 | 91,403,935 | CAAACCTCTGACACCTCAGCCAGCC |
TDR | 91,403,956 | 91,403,974 | CCTCAGCGCCTGAATCTTC |
PCR Primers
Primer | Sequence |
SU | CAGGGATCAAGGAAGGACTG |
SD | GCCTTACCTCTGACCCTTCC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | 521 bp | - | + | + |
TUF | TUR | 73 bp | + | + | - |
TDF | TDR | 86 bp | + | + | - |
NeoFwd | SD | 440 bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
11700A-A4 | VGB6 | C57BL/6NTac | |
11700A-F10 | VGB6 | C57BL/6NTac | |