11744   Hcrt     Status: ES cell colonies screened / QC positives

GeneHcrt
Chromosome11
Deletion Start100,762,313
Deletion End100,761,263
Deletion Size1,051
Genome Build38
MGI IDMGI:1202306
NCBI Gene ID15171
BAC ID243D4
BAC LibrarybMQ
CassetteZEN-Ub1
Clones AvailableYes

Primer Genomic Coordinates on Chromosome 11

Please be aware that these oligonucleotides have been validated only by Taqman assay.

PrimerStartEndSequence
TUF100,762,604100,762,624TTCCGATGTTCTCTGTGCTTG
TUP100,762,569100,762,596TGTCTTGCACTCAACAGGGTAGTAGGGA
TUR100,762,534100,762,554AGCCCTTCCTCACCTACAAAC
TDF100,762,034100,762,053CCTGCCGTCTCTACGAACTG
TDP100,762,013100,762,033TTGCACGGAGCTGGCAACCAC
TDR100,761,984100,762,005CGCTTTCCCAGAGTCAGGATAC

PCR Primers

PrimerSequence
SUATTCTTTGGGTCCAACCTGG
SDACTGCAAGGTTCCTTGCTGG
LacInRTTGACTGTAGCGGCTGATGTTG
LacInfGGTAAACTGGCTCGGATTAGGG
NeoInRTACTTTCTCGGCAGGAGCAAGGTG
NeoInFTTCGGCTATGACTGGGCACAACAG
LacInZRevGTCTGTCCTAGCTTCCTCACTG
NeoFwdTCATTCTCAGTATTGTTTTGCC

Predicted PCR Products

Forward PrimerReverse PrimerLengthWTHETKO
SULacZRev bp-++
TUFTUR91 bp++-
TDFTDR70 bp++-
NeoFwdSD bp-++
LacInfLacInR210 bp-++
NeoInfNeoInR282 bp-++

Available Clones

ES Cell ordering information can be found at the KOMP Repository.
Clone NameParental ES CellMouse StrainCassette Copy Number
11744A-C9VGB6C57BL/6NTac
11744A-D11VGB6C57BL/6NTac
11744A-H1VGB6C57BL/6NTac