Gene | Ubxn10 |
Chromosome | 4 |
Deletion Start | 138,735,205 |
Deletion End | 138,734,343 |
Deletion Size | 863 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 4
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 138,721,156 | 138,721,177 | GCACTATCCTCTTCACCTCCAC |
TUP | 138,721,130 | 138,721,150 | TCCTCCGGGTCTCCCAGCAAC |
TUR | 138,721,103 | 138,721,120 | GACCGTTGCACAGACTCC |
TDF | 138,720,609 | 138,720,628 | AGACGGTTCTCCGACCTCAC |
TDP | 138,720,584 | 138,720,608 | CAAGTCCCTCCAGGAATGCGGCATC |
TDR | 138,720,558 | 138,720,580 | GAGATGCCCAACACGGATTTATG |
PCR Primers
Primer | Sequence |
SU | AAGTTCCAAGGACTTTGGATC |
SD | GATGTAGAACTTCCTCATGG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 75 bp | + | + | - |
TDF | TDR | 71 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
11750A-C4 | VGB6 | C57BL/6NTac | |
11750A-H2 | VGB6 | C57BL/6NTac | |
11750A-G4 | VGB6 | C57BL/6NTac | |
11750A-F4 | VGB6 | C57BL/6NTac | |
11750A-F9 | VGB6 | C57BL/6NTac | |
11750A-F2 | VGB6 | C57BL/6NTac | |