Gene | Star |
Chromosome | 8 |
Deletion Start | 25,808,572 |
Deletion End | 25,812,888 |
Deletion Size | 4,317 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 8
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 25,809,317 | 25,809,338 | AGAGATGTGGCTGGAGTTTGAG |
TUP | 25,809,339 | 25,809,360 | TCCCTGCTGGGATCTGTGTCCC |
TUR | 25,809,394 | 25,809,413 | CTCTGGGAGAGGGACAGTTC |
TDF | 25,812,747 | 25,812,767 | TCCCAGTGCTCTTGTGTCTAC |
TDP | 25,812,776 | 25,812,802 | TGGCTGCCGAAGACAATCATCAACCAG |
TDR | 25,812,820 | 25,812,839 | GGTGGTTGGCGAACTCTATC |
PCR Primers
Primer | Sequence |
SU | TACCTGCAGAGTCTGGTCC |
SD | GTCAGCATATACAAGCCTAG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 97 bp | + | + | - |
TDF | TDR | 93 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
11760A-H10 | VGB6 | C57BL/6NTac | |
11760C-G4 | VGB6 | C57BL/6NTac | |
11760C-F11 | VGB6 | C57BL/6NTac | |
11760C-B12 | VGB6 | C57BL/6NTac | |