Gene | Dnajb6 |
Chromosome | 5 |
Deletion Start | 29,748,374 |
Deletion End | 29,785,216 |
Deletion Size | 36,843 |
Genome Build | 38 |
|
|
Primer Genomic Coordinates on Chromosome 5
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 29,748,734 | 29,748,757 | CATGATAGGCAGACACCAGTTTAC |
TUP | 29,748,758 | 29,748,781 | TGCCCAACACAGACCTAAAGTGGC |
TUR | 29,748,843 | 29,748,867 | CACCAACTAGATAGAATGCCCAATG |
TDF | 29,784,991 | 29,785,011 | GTTGCTGGTGTGCAGTGTTTC |
TDP | 29,785,020 | 29,785,047 | TGTTTCCTTAGGGCTCAAAGAAGGTGGC |
TDR | 29,785,050 | 29,785,069 | TCTGCTTCTGCTTCTTCCTC |
PCR Primers
Primer | Sequence |
SU | GCACCTGATCTCTGCCTCAG |
SD | AAACTGCGCACTGTACCACC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 134 bp | + | + | - |
TDF | TDR | 79 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
11798A-A5 | VGB6 | C57BL/6NTac | |
11798A-D6 | VGB6 | C57BL/6NTac | |
11798A-E1 | VGB6 | C57BL/6NTac | |
11798A-G7 | VGB6 | C57BL/6NTac | |