Gene | Alas2 |
Chromosome | X |
Deletion Start | 150,552,167 |
Deletion End | 150,570,551 |
Deletion Size | 18,385 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome X
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 150,552,289 | 150,552,311 | CACTCAAGGACCAACCTGTTCTC |
TUP | 150,552,315 | 150,552,340 | TCCATCTTAAGGCAACCAAGGCTGGA |
TUR | 150,552,349 | 150,552,371 | TCCCATTTGCCAATAACCTCTTC |
TDF | 150,570,391 | 150,570,411 | GCAACTTCTGTCATCGTCCTG |
TDP | 150,570,416 | 150,570,443 | CTTTGAACTTATGAGCGAGTGGGAGCGA |
TDR | 150,570,445 | 150,570,466 | GGTCCCATGTTCCCAAAGTAGG |
PCR Primers
Primer | Sequence |
SU | GGCATCTGTCCACATAAGTG |
SD | TTTGTACAGCTTCCAGTACAG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 83 bp | + | + | - |
TDF | TDR | 76 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
11828B-A2 | VGB6 | C57BL/6NTac | |
11828B-E2 | VGB6 | C57BL/6NTac | |