Gene | Aanat |
Chromosome | 11 |
Deletion Start | 116,595,640 |
Deletion End | 116,597,098 |
Deletion Size | 1,459 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 11
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 116,596,162 | 116,596,181 | TGGATGAGATCCGGCACTTC |
TUP | 116,596,184 | 116,596,208 | AACCCTGTGTCCAGAGCTGTCACTG |
TUR | 116,596,244 | 116,596,261 | TCCCACAGCGAGCCAATG |
TDF | 116,596,734 | 116,596,755 | GGAGAAACAGGTGTAGCAGAAG |
TDP | 116,596,759 | 116,596,781 | CCCAGACATCTGTCCCTTGCCCA |
TDR | 116,596,789 | 116,596,809 | CCTGTGTAGTGTCAGCGACTC |
PCR Primers
Primer | Sequence |
SU | GTTATGGTGCCCACAGTCTC |
SD | GTCTTGCCTTTGTGCACAGT |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 100 bp | + | + | - |
TDF | TDR | 76 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
11868C-F1 | VGB6 | C57BL/6NTac | |
11868C-G4 | VGB6 | C57BL/6NTac | |