Gene | Ctsk |
Chromosome | 3 |
Deletion Start | 95,500,838 |
Deletion End | 95,508,932 |
Deletion Size | 8,095 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 3
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 95,500,864 | 95,500,884 | CATGGTGAGCTTTGCTCTGTC |
TUP | 95,500,885 | 95,500,907 | TCCGGAGGAAATGCTGGACACCC |
TUR | 95,500,940 | 95,500,961 | TGGGCACCTTGCTGTTATACTG |
TDF | 95,508,853 | 95,508,872 | TGCTCTCTTGGCTCGGAATA |
TDP | 95,508,877 | 95,508,899 | CAACGCCTGCGGCATTACCAACA |
TDR | 95,508,913 | 95,508,933 | GCTGGCTGGAATCACATCTTG |
PCR Primers
Primer | Sequence |
SU | GTCTGTGTGTGTATGTGGTG |
SD | ACAGAGTCCACAACTCTCAG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 98 bp | + | + | - |
TDF | TDR | 81 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
11877A-F3 | VGB6 | C57BL/6NTac | |
11877A-F7 | VGB6 | C57BL/6NTac | |