Gene | Atp5b |
Chromosome | 10 |
Deletion Start | 128,083,330 |
Deletion End | 128,090,130 |
Deletion Size | 6,801 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 10
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 128,083,959 | 128,083,977 | AGTCATCGGCGCTGTGGTG |
TUP | 128,083,979 | 128,084,006 | ACGTCCAGTTCGATGAGGGATTACCACC |
TUR | 128,084,029 | 128,084,047 | GTCTGCTGTCCCTGCCTTG |
TDF | 128,089,593 | 128,089,614 | GAGTACACGATCCCATGAGGAG |
TDP | 128,089,617 | 128,089,643 | AGATCCTCCCAGAACAGTCAGTGGAGG |
TDR | 128,089,694 | 128,089,715 | GGCTTGAGTGGTGGTTTAACAC |
PCR Primers
Primer | Sequence |
SU | TAGGTTTCGAGGCTTAGAGG |
SD | CACTTTAGTGATAGTTGGAGC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 89 bp | + | + | - |
TDF | TDR | 123 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
11958A-G4 | VGB6 | C57BL/6NTac | |
11958B-F4 | VGB6 | C57BL/6NTac | |
11958B-D2 | VGB6 | C57BL/6NTac | |
11958B-A10 | VGB6 | C57BL/6NTac | |
11958B-B4 | VGB6 | C57BL/6NTac | |
11958B-G6 | VGB6 | C57BL/6NTac | |