Gene | Syf2 |
Chromosome | 4 |
Deletion Start | 134,930,998 |
Deletion End | 134,937,026 |
Deletion Size | 6,029 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 4
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 134,931,647 | 134,931,670 | CCCATCTCTTGTTTGGATGTCTAC |
TUP | 134,931,671 | 134,931,694 | TCAAATCGTAAGCATGGCTGGCGA |
TUR | 134,931,753 | 134,931,773 | GGGTCAGATGACCAAGCAGTC |
TDF | 134,936,848 | 134,936,871 | AGCGAGACAAATACAGCCGAAGAC |
TDP | 134,936,873 | 134,936,899 | CCCGTACAATGATGATGCCGACATCGA |
TDR | 134,936,906 | 134,936,927 | GAACTTGGCGTTCCTCTCATTG |
PCR Primers
Primer | Sequence |
SU | TCTTTAGAGCTGGTGACAGG |
SD | CACCCGTGTACATCTAAGC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 127 bp | + | + | - |
TDF | TDR | 80 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
11966A-E3 | VGB6 | C57BL/6NTac | |
11966B-C7 | VGB6 | C57BL/6NTac | |
11966B-D11 | VGB6 | C57BL/6NTac | |
11966B-E7 | VGB6 | C57BL/6NTac | |
11966B-H4 | VGB6 | C57BL/6NTac | |
11966B-G7 | VGB6 | C57BL/6NTac | |
11966C-F2 | VGB6 | C57BL/6NTac | |