Gene | Pkp2 |
Chromosome | 16 |
Deletion Start | 16,213,376 |
Deletion End | 16,240,704 |
Deletion Size | 27,329 |
Genome Build | 38 |
|
|
Primer Genomic Coordinates on Chromosome 16
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 16,214,015 | 16,214,034 | CAAGTGCTCCACTCCGTATC |
TUP | 16,214,035 | 16,214,062 | TGCGACTAAACAAATTGAGCAAGTCGGC |
TUR | 16,214,083 | 16,214,103 | CTTATCCTCCGCAGGGTGTTC |
TDF | 16,240,526 | 16,240,550 | GCTTCTACAACTGCTCAAACTTCAG |
TDP | 16,240,551 | 16,240,577 | AACGAAGATGTTCAACGGGCTGCTTGT |
TDR | 16,240,630 | 16,240,651 | CGAGGCACTCCATTCAGTTCAG |
PCR Primers
Primer | Sequence |
SU | TGCTACTCACAGCAGAAGTTC |
SD | CGCATGCTCAAACCAAAAGG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 89 bp | + | + | - |
TDF | TDR | 126 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
11973C-B11 | VGB6 | C57BL/6NTac | |
11973C-C10 | VGB6 | C57BL/6NTac | |
11973B-D3 | VGB6 | C57BL/6NTac | |
11973B-E2 | VGB6 | C57BL/6NTac | |
11973C-D11 | VGB6 | C57BL/6NTac | |
11973C-F5 | VGB6 | C57BL/6NTac | |