Gene | Aldoc |
Chromosome | 11 |
Deletion Start | 78,324,405 |
Deletion End | 78,326,357 |
Deletion Size | 1,953 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 11
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 78,325,273 | 78,325,294 | GGCTTTCTCCCATCCTATCTTC |
TUP | 78,325,296 | 78,325,322 | ACTTCTTCCAGTTAACCCTGCTCTTGC |
TUR | 78,325,354 | 78,325,374 | CTCCGTCAGGCAGAATCTCAG |
TDF | 78,326,197 | 78,326,215 | GCAGCGTGCATTCCACATC |
TDP | 78,326,216 | 78,326,238 | CGTGGTCTGGCTCAGTCTGCTCA |
TDR | 78,326,259 | 78,326,278 | GCTGCAAGCCCGTTCATCTG |
PCR Primers
Primer | Sequence |
SU | ACCTGGCAGCAGTTTCCAG |
SD | CTATACCATCAAGGGTAACTG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 102 bp | + | + | - |
TDF | TDR | 82 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
11975A-B1 | VGB6 | C57BL/6NTac | |
11975A-C6 | VGB6 | C57BL/6NTac | |
11975A-D3 | VGB6 | C57BL/6NTac | |
11975A-D4 | VGB6 | C57BL/6NTac | |
11975A-D5 | VGB6 | C57BL/6NTac | |
11975A-E5 | VGB6 | C57BL/6NTac | |