Gene | Oat |
Chromosome | 7 |
Deletion Start | 132,575,655 |
Deletion End | 132,563,724 |
Deletion Size | 11,932 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 7
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 132,569,760 | 132,569,778 | GGCGACTAAGGCTCCTGTG |
TUP | 132,569,736 | 132,569,759 | CCCAGCAGTCTTCCATGGGAGCCT |
TUR | 132,569,708 | 132,569,728 | GCCCATTTCCTCTGCATTCAC |
TDF | 132,558,298 | 132,558,316 | AAGGTGTGCCTGCGACTTC |
TDP | 132,558,272 | 132,558,294 | ATAACGGGCTTCTGGCCAAGCCA |
TDR | 132,558,190 | 132,558,211 | TGTTGATGATCTCCACGGACTC |
PCR Primers
Primer | Sequence |
SU | AGGGCCATTTGAACCCAGAG |
SD | AAGGAAACTGTAAAGACGCAC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 71 bp | + | + | - |
TDF | TDR | 127 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
11989A-B6 | VGB6 | C57BL/6NTac | |
11989A-F2 | VGB6 | C57BL/6NTac | |