Gene | Calcoco2 |
Chromosome | 11 |
Deletion Start | 96,107,592 |
Deletion End | 96,099,913 |
Deletion Size | 7,680 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 11
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 96,106,662 | 96,106,685 | TGCAAGCAGGACTTAGTAAGATGG |
TUP | 96,106,636 | 96,106,660 | TGAACCTTAGAGTTTTGATAGCTTT |
TUR | 96,106,608 | 96,106,630 | AGGAGATCCTGTCTGGACCCTTC |
TDF | 96,100,891 | 96,100,910 | AGCTGTCACCGTGGACACTG |
TDP | 96,100,863 | 96,100,888 | CACTAGAAGCAGAGCCTGCAAGAGCA |
TDR | 96,100,826 | 96,100,848 | CAACAGGCATCCAAGGACTAGAG |
PCR Primers
Primer | Sequence |
SU | CTAGTGTGGGAAGGCAGTGG |
SD | TGAGTCCTTTTGAGACAGGG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 78 bp | + | + | - |
TDF | TDR | 85 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
12050A-C2 | VGB6 | C57BL/6NTac | |
12050A-D4 | VGB6 | C57BL/6NTac | |
12050A-F7 | VGB6 | C57BL/6NTac | |
12050A-E5 | VGB6 | C57BL/6NTac | |