Gene | Aifm3 |
Chromosome | 16 |
Deletion Start | 17,492,076 |
Deletion End | 17,507,243 |
Deletion Size | 15,168 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 16
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 17,492,466 | 17,492,484 | TGCCCTCTTAGGGTGACTG |
TUP | 17,492,485 | 17,492,512 | ACAGGGTATCATGGACAGGTCCCTACTC |
TUR | 17,492,547 | 17,492,569 | ACAGGAGATGAGGCCCAGAGAAG |
TDF | 17,507,090 | 17,507,108 | TCTTCTGCCCTGACCCATC |
TDP | 17,507,110 | 17,507,134 | TCCTCTCATTCCTGCAGAACCGGTG |
TDR | 17,507,168 | 17,507,188 | CCCAAGTCCACCACAGGAGAG |
PCR Primers
Primer | Sequence |
SU | GAGCACAGAGGGTCTCCAAC |
SD | AAGTGTCGGCCCAATTACAC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 104 bp | + | + | - |
TDF | TDR | 99 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
12073A-H9 | VGB6 | C57BL/6NTac | |
12073A-H3 | VGB6 | C57BL/6NTac | |
12073A-G12 | VGB6 | C57BL/6NTac | |
12073A-B10 | VGB6 | C57BL/6NTac | |