Gene | Gdnf |
Chromosome | 15 |
Deletion Start | 7,811,057 |
Deletion End | 7,834,867 |
Deletion Size | 23,811 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 15
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 7,811,906 | 7,811,929 | GGGAGTAGGAAGGCACTTTAACAG |
TUP | 7,811,932 | 7,811,954 | TCCTCCCTGCTTGCAATCTTGCC |
TUR | 7,812,009 | 7,812,027 | TGGCGAACTCAGGGCTAAG |
TDF | 7,834,259 | 7,834,279 | GGGTCGGATTCTAGCGAGTTC |
TDP | 7,834,280 | 7,834,307 | CCGTGACTTAGAAGACTGCCCGAAATGA |
TDR | 7,834,343 | 7,834,365 | AATCTTCAGGCATATTGGCTGTC |
PCR Primers
Primer | Sequence |
SU | TTTGACGTGGTGTCTCGTTC |
SD | GAATCGTCACATTTCCCTGG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 122 bp | + | + | - |
TDF | TDR | 107 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
12074A-C7 | VGB6 | C57BL/6NTac | |
12074B-F4 | VGB6 | C57BL/6NTac | |
12074B-D12 | VGB6 | C57BL/6NTac | |