12158   S100a9     Status: Germline transmission achieved

GeneS100a9
Chromosome3
Deletion Start90,695,585
Deletion End90,693,045
Deletion Size2,541
Genome Build38
MGI IDMGI:1338947
NCBI Gene ID20202
BAC ID257k18
BAC LibrarybMQ
CassetteZEN-Ub1
Clones AvailableYes

Primer Genomic Coordinates on Chromosome 3

Please be aware that these oligonucleotides have been validated only by Taqman assay.

PrimerStartEndSequence
TUF90,695,18190,695,199CCCTGACACCCTGAGCAAG
TUP90,695,14690,695,174TTCAGACAAATGGTGGAAGCACAGTTGGC
TUR90,695,11790,695,136ACAAGCCAAGCCTCACCTTC
TDF90,692,96990,692,991CCTGTGCTTCAGAGTTCTCTTCC
TDP90,692,93990,692,966AGCCCTAACAGCCTCCTCTATTTCACCC
TDR90,692,91190,692,935GAGGGCTTCATTTCTCTTCTCTTTC

PCR Primers

PrimerSequence
SUGAAGCCCTCCTAGGTTGATC
SDCAGTACTACACAGGCTGCTG
LacInRTTGACTGTAGCGGCTGATGTTG
LacInfGGTAAACTGGCTCGGATTAGGG
NeoInRTACTTTCTCGGCAGGAGCAAGGTG
NeoInFTTCGGCTATGACTGGGCACAACAG
LacInZRevGTCTGTCCTAGCTTCCTCACTG
NeoFwdTCATTCTCAGTATTGTTTTGCC

Predicted PCR Products

Forward PrimerReverse PrimerLengthWTHETKO
SULacZRev bp-++
TUFTUR83 bp++-
TDFTDR81 bp++-
NeoFwdSD bp-++
LacInfLacInR210 bp-++
NeoInfNeoInR282 bp-++

Available Clones

ES Cell ordering information can be found at the KOMP Repository.
Clone NameParental ES CellMouse StrainCassette Copy Number
12158A-E1VGB6C57BL/6NTac
12158A-E9VGB6C57BL/6NTac
12158B-F9VGB6C57BL/6NTac