Gene | Cetn2 |
Chromosome | X |
Deletion Start | 72,918,313 |
Deletion End | 72,914,132 |
Deletion Size | 4,182 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome X
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 72,917,926 | 72,917,949 | AAGAGGTTTACTGTGTTCTGATGG |
TUP | 72,917,903 | 72,917,925 | TCGCAAACGCTTTCAGGAGAGGC |
TUR | 72,917,882 | 72,917,899 | GCACCTGCGTGCTTTCTC |
TDF | 72,914,758 | 72,914,782 | GGAAAGCTAGTATCCCTCATACCTG |
TDP | 72,914,714 | 72,914,742 | ACCTGTGGACCCTGTTTCGATAATACACA |
TDR | 72,914,664 | 72,914,683 | TGGAAAGTCACCCTGACCTG |
PCR Primers
Primer | Sequence |
SU | CTTCCTCCAGGCTCTGTCAC |
SD | AATGCCACAGCAAGCACTC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 68 bp | + | + | - |
TDF | TDR | 119 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
12185A-A7 | VGB6 | C57BL/6NTac | |
12185A-F8 | VGB6 | C57BL/6NTac | |
12185A-H8 | VGB6 | C57BL/6NTac | |