12187   Cldn1     Status: ES cell clone microinjected

GeneCldn1
Chromosome16
Deletion Start26,371,623
Deletion End26,358,954
Deletion Size12,670
Genome Build38
MGI IDMGI:1276109
NCBI Gene ID12737
BAC ID329J10
BAC LibrarybMQ
CassetteZEN-Ub1
Clones AvailableYes

Primer Genomic Coordinates on Chromosome 16

Please be aware that these oligonucleotides have been validated only by Taqman assay.

PrimerStartEndSequence
TUF26,371,30226,371,321GGAGCCCTTGTCCTCTGTAG
TUP26,371,27626,371,300AGCTTCATTCAGCCCAGAGGCTACC
TUR26,371,21226,371,235GGCTTGGGTTCTTTCTGCTTTATC
TDF26,359,73526,359,754AGGCAAAGCTGCCAGTTCAG
TDP26,359,70726,359,732CTGCAGCAGCTGAACTTGAGTCTGGA
TDR26,359,63426,359,658GATGAGGAGTCTGTGGTTGACTATG

PCR Primers

PrimerSequence
SUACGAAGGGAAGAGGTTAGGG
SDTGTGCTGGTACAGTATGAGGAG
LacInRTTGACTGTAGCGGCTGATGTTG
LacInfGGTAAACTGGCTCGGATTAGGG
NeoInRTACTTTCTCGGCAGGAGCAAGGTG
NeoInFTTCGGCTATGACTGGGCACAACAG
LacInZRevGTCTGTCCTAGCTTCCTCACTG
NeoFwdTCATTCTCAGTATTGTTTTGCC

Predicted PCR Products

Forward PrimerReverse PrimerLengthWTHETKO
SULacZRev bp-++
TUFTUR110 bp++-
TDFTDR121 bp++-
NeoFwdSD bp-++
LacInfLacInR210 bp-++
NeoInfNeoInR282 bp-++

Available Clones

ES Cell ordering information can be found at the KOMP Repository.
Clone NameParental ES CellMouse StrainCassette Copy Number
12187A-F8VGB6C57BL/6NTac
12187B-C9VGB6C57BL/6NTac
12187B-H2VGB6C57BL/6NTac
12187B-G6VGB6C57BL/6NTac