Gene | Rnf181 |
Chromosome | 6 |
Deletion Start | 72,362,362 |
Deletion End | 72,360,564 |
Deletion Size | 1,799 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 6
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 72,362,159 | 72,362,176 | TCAGGGCGACGCGATTAG |
TUP | 72,362,134 | 72,362,158 | TCGAGTCGGAGTCGTTAATTTGGGC |
TUR | 72,362,070 | 72,362,090 | GCTACACCCACCCTTTCTATC |
TDF | 72,360,979 | 72,360,998 | GGAAGGCAGGAGCAGGAAAG |
TDP | 72,360,947 | 72,360,976 | CCGGAATACCGCTCTTGATTTCTCTAGACA |
TDR | 72,360,918 | 72,360,936 | AGCTCATGGCGGCACAGAG |
PCR Primers
Primer | Sequence |
SU | GCAGGTAAACTCAGCCAAGG |
SD | AGAACACTCAGACCCAAGCC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 107 bp | + | + | - |
TDF | TDR | 81 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
12199B-B6 | VGB6 | C57BL/6NTac | |
12199B-H7 | VGB6 | C57BL/6NTac | |
12199B-C3 | VGB6 | C57BL/6NTac | |
12199B-F8 | VGB6 | C57BL/6NTac | |
12199B-D10 | VGB6 | C57BL/6NTac | |