Gene | Lhx3 |
Chromosome | 2 |
Deletion Start | 26,206,435 |
Deletion End | 26,201,003 |
Deletion Size | 5,433 |
Genome Build | 38 |
|
|
Primer Genomic Coordinates on Chromosome 2
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 26,205,948 | 26,205,968 | GGGTCATGCTGAACTCATCTC |
TUP | 26,205,918 | 26,205,944 | TGAGTCGAGTCTTAGTGTCTGCACCGG |
TUR | 26,205,874 | 26,205,894 | TTTCCCTGTAATCGCGTCTTG |
TDF | 26,201,108 | 26,201,128 | TCCTGGCTGGATGAAGTAGAC |
TDP | 26,201,085 | 26,201,107 | CATGCTCAGTTCTGACCGAGGCC |
TDR | 26,201,039 | 26,201,057 | CCAGAGGCAGCACCAAGAC |
PCR Primers
Primer | Sequence |
SU | AACGTGAGCAAAGAGAACGC |
SD | CAGGAAGGACACAAGCACAG |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 95 bp | + | + | - |
TDF | TDR | 90 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
12324A-B9 | VGB6 | C57BL/6NTac | |
12324A-D3 | VGB6 | C57BL/6NTac | |
12324A-E10 | VGB6 | C57BL/6NTac | |
12324A-E11 | VGB6 | C57BL/6NTac | |
12324A-H2 | VGB6 | C57BL/6NTac | |
12324B-A10 | VGB6 | C57BL/6NTac | |
12324B-B3 | VGB6 | C57BL/6NTac | |
12324B-C8 | VGB6 | C57BL/6NTac | |
12324B-F11 | VGB6 | C57BL/6NTac | |
12324B-H7 | VGB6 | C57BL/6NTac | |