Gene | Il1b |
Chromosome | 2 |
Deletion Start | 129,370,327 |
Deletion End | 129,364,973 |
Deletion Size | 5,355 |
Genome Build | 38 |
|
|
Primer Genomic Coordinates on Chromosome 2
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 129,369,706 | 129,369,726 | GTTGACGGACCCCAAAAGATG |
TUP | 129,369,681 | 129,369,705 | AAGGTGAGACTCTGAGCTTGGCTCC |
TUR | 129,369,657 | 129,369,676 | ATGCCACAGTCCCTCCACAG |
TDF | 129,365,067 | 129,365,086 | GGGAAACAACAGTGGTCAGG |
TDP | 129,365,032 | 129,365,060 | TTGACTTCACCATGGAATCCGTGTCTTCC |
TDR | 129,365,008 | 129,365,027 | AGAAACAGTCCAGCCCATAC |
PCR Primers
Primer | Sequence |
SU | TTGCTTCCTTCCAGAGCATC |
SD | AGCAATGTGCTGGTGCTTC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 70 bp | + | + | - |
TDF | TDR | 79 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
12453B-F2 | VGB6 | C57BL/6NTac | |
12453B-B1 | VGB6 | C57BL/6NTac | |
12453B-A7 | VGB6 | C57BL/6NTac | |