Gene | Il13 |
Chromosome | 11 |
Deletion Start | 53,634,631 |
Deletion End | 53,631,985 |
Deletion Size | 2,647 |
Genome Build | 38 |
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Primer Genomic Coordinates on Chromosome 11
Please be aware that these oligonucleotides have been validated only by Taqman assay.
Primer | Start | End | Sequence |
TUF | 53,633,894 | 53,633,918 | GCTTCCTAGAACCATTTGGCATCTG |
TUP | 53,633,867 | 53,633,892 | CAGCTGGGTTTCCCATGTCATGTCCA |
TUR | 53,633,815 | 53,633,835 | TCCTGTCCCACTGACTGAAAC |
TDF | 53,632,212 | 53,632,230 | CCCTGCTGAATGCCAACTG |
TDP | 53,632,185 | 53,632,210 | TCTTGACCTTGGCGTCCCTCTAATGG |
TDR | 53,632,149 | 53,632,169 | GAGGCTGGAGACCTGTGAAAC |
PCR Primers
Primer | Sequence |
SU | CACCGTGGAAATAAACCACC |
SD | ATAGGCAGCAAACCATGTCC |
LacInR | TTGACTGTAGCGGCTGATGTTG |
LacInf | GGTAAACTGGCTCGGATTAGGG |
NeoInR | TACTTTCTCGGCAGGAGCAAGGTG |
NeoInF | TTCGGCTATGACTGGGCACAACAG |
LacInZRev | GTCTGTCCTAGCTTCCTCACTG |
NeoFwd | TCATTCTCAGTATTGTTTTGCC |
Predicted PCR Products
Forward Primer | Reverse Primer | Length | WT | HET | KO |
SU | LacZRev | bp | - | + | + |
TUF | TUR | 104 bp | + | + | - |
TDF | TDR | 82 bp | + | + | - |
NeoFwd | SD | bp | - | + | + |
LacInf | LacInR | 210 bp | - | + | + |
NeoInf | NeoInR | 282 bp | - | + | + |
Available Clones
ES Cell ordering information can be found at the
KOMP Repository.
Clone Name | Parental ES Cell | Mouse Strain | Cassette Copy Number |
12483B-G5 | VGB6 | C57BL/6NTac | |
12483A-D5 | VGB6 | C57BL/6NTac | |